Neural Networks and Deep Learning 2 - ANN

import numpy as np
import numpy.random as rnd
import os
import matplotlib
import matplotlib.pyplot as plt


Perceptrons

from sklearn.datasets import load_iris
iris = load_iris()
X = iris.data[:,(2,3)]
y = (iris.target == 0).astype(np.int)

from sklearn.linear_model import Perceptron

per_clf = Perceptron(random_state=42)
per_clf.fit(X, y)
y_pred = per_clf.predict([[2, 0.5]])
y_pred

a = -per_clf.coef_[0][0] / per_clf.coef_[0][1]
b = -per_clf.intercept_ / per_clf.coef_[0][1]

axes = [0, 5, 0, 2]

x0, x1 = np.meshgrid(
        np.linspace(axes[0], axes[1], 500).reshape(-1, 1),
        np.linspace(axes[2], axes[3], 200).reshape(-1, 1),
    )
X_new = np.c_[x0.ravel(), x1.ravel()]
y_predict = per_clf.predict(X_new)
zz = y_predict.reshape(x0.shape)

plt.figure(figsize=(10, 4))
plt.plot(X[y==0, 0], X[y==0, 1], "bs", label="Not Iris-Setosa")
plt.plot(X[y==1, 0], X[y==1, 1], "yo", label="Iris-Setosa")

plt.plot([axes[0], axes[1]], [a * axes[0] + b, a * axes[1] + b], "k-", linewidth=3)
from matplotlib.colors import ListedColormap
custom_cmap = ListedColormap(['#9898ff', '#fafab0'])

plt.contourf(x0, x1, zz, cmap=custom_cmap, linewidth=5)
plt.xlabel("Petal length", fontsize=14)
plt.ylabel("Petal width", fontsize=14)
plt.legend(loc="lower right", fontsize=14)
plt.axis(axes)
plt.show()

Activation Functions

def logit(z):
    return 1/(1+np.exp(-z))
def relu(z):
    return np.maximum(0,z)
def derivative(f, z, eps=0.000001):
    return (f(z + eps) - f(z - eps))/(2 * eps)
def tanh(z):
    return np.tanh(z)

z = np.linspace(-5, 5, 200)

plt.figure(figsize=(11,4))

plt.subplot(121)
plt.plot(z, np.sign(z), "r-", linewidth=2, label="Step")
plt.plot(z, logit(z), "g--", linewidth=2, label="Logit")
plt.plot(z, tanh(z), "b-", linewidth=2, label="Tanh")
plt.plot(z, relu(z), "m-.", linewidth=2, label="ReLU")
plt.grid(True)
plt.legend(loc="center right", fontsize=14)
plt.title("Activation functions", fontsize=14)
plt.axis([-5, 5, -1.2, 1.2])

plt.subplot(122)
plt.plot(z, derivative(np.sign, z), "r-", linewidth=2, label="Step")
plt.plot(0, 0, "ro", markersize=5)
plt.plot(0, 0, "rx", markersize=10)
plt.plot(z, derivative(logit, z), "g--", linewidth=2, label="Logit")
plt.plot(z, derivative(np.tanh, z), "b-", linewidth=2, label="Tanh")
plt.plot(z, derivative(relu, z), "m-.", linewidth=2, label="ReLU")
plt.grid(True)
#plt.legend(loc="center right", fontsize=14)
plt.title("Derivatives", fontsize=14)
plt.axis([-5, 5, -0.2, 1.2])

plt.show()


def heaviside(z):
    return (z >= 0).astype(z.dtype)

def sigmoid(z):
    return 1/(1+np.exp(-z))

def mlp_xor(x1, x2, activation=heaviside):
    return activation(-activation(x1 + x2 - 1.5) + activation(x1 + x2 - 0.5) - 0.5)

x1s = np.linspace(-0.2, 1.2, 100)
x2s = np.linspace(-0.2, 1.2, 100)
x1, x2 = np.meshgrid(x1s, x2s)

z1 = mlp_xor(x1, x2, activation=heaviside)
z2 = mlp_xor(x1, x2, activation=sigmoid)

plt.figure(figsize=(10,4))

plt.subplot(121)
plt.contourf(x1, x2, z1)
plt.plot([0, 1], [0, 1], "gs", markersize=20)
plt.plot([0, 1], [1, 0], "y^", markersize=20)
plt.grid(True)

plt.subplot(122)
plt.contourf(x1, x2, z2)
plt.plot([0, 1], [0, 1], "gs", markersize=20)
plt.plot([0, 1], [1, 0], "y^", markersize=20)
plt.grid(True)
plt.show()

Use TF.Learn 

from tensorflow.examples.tutorials.mnist import input_data
mnist = input_data.read_data_sets("/tmp/data/")
X_train = mnist.train.images
X_test = mnist.test.images
y_train = mnist.train.labels.astype("int")
y_test = mnist.test.labels.astype("int")

import tensorflow as tf

feature_columns = tf.contrib.learn.infer_real_valued_columns_from_input(X_train)
dnn_clf = tf.contrib.learn.DNNClassifier(hidden_units=[300, 100], n_classes=10,
                                         feature_columns=feature_columns)
dnn_clf.fit(x=X_train, y=y_train, batch_size=50, steps=40000)


from sklearn.metrics import accuracy_score

y_pred = list(dnn_clf.predict(X_test))
accuracy = accuracy_score(y_test, y_pred)
accuracy

from sklearn.metrics import log_loss

y_pred_proba = list(dnn_clf.predict_proba(X_test))
log_loss(y_test, y_pred_proba)

dnn_clf.evaluate(X_test, y_test)

Use Plain TensorFlor

import tensorflow as tf

def neuron_layer(X, n_neurons, name, activation=None):
    with tf.name_scope(name):
        n_inputs = int(X.get_shape()[1])
        stddev = 1 / np.sqrt(n_inputs)
        init = tf.truncated_normal((n_inputs, n_neurons), stddev=stddev)
        W = tf.Variable(init, name="weights")
        b = tf.Variable(tf.zeros([n_neurons]), name="biases")
        Z = tf.matmul(X, W) + b
        if activation=="relu":
            return tf.nn.relu(Z)
        else:
            return Z

tf.reset_default_graph()

n_inputs = 28*28  # MNIST
n_hidden1 = 300
n_hidden2 = 100
n_outputs = 10
learning_rate = 0.01

X = tf.placeholder(tf.float32, shape=(None, n_inputs), name="X")
y = tf.placeholder(tf.int64, shape=(None), name="y")

with tf.name_scope("dnn"):
    hidden1 = neuron_layer(X, n_hidden1, "hidden1", activation="relu")
    hidden2 = neuron_layer(hidden1, n_hidden2, "hidden2", activation="relu")
    logits = neuron_layer(hidden2, n_outputs, "output")

with tf.name_scope("loss"):
    xentropy = tf.nn.sparse_softmax_cross_entropy_with_logits(labels=y, logits=logits)
    loss = tf.reduce_mean(xentropy, name="loss")

with tf.name_scope("train"):
    optimizer = tf.train.GradientDescentOptimizer(learning_rate)
    training_op = optimizer.minimize(loss)

with tf.name_scope("eval"):
    correct = tf.nn.in_top_k(logits, y, 1)
    accuracy = tf.reduce_mean(tf.cast(correct, tf.float32))
 
init = tf.global_variables_initializer()
saver = tf.train.Saver()


n_epochs = 20
batch_size = 50

with tf.Session() as sess:
    init.run()
    for epoch in range(n_epochs):
        for iteration in range(mnist.train.num_examples // batch_size):
            X_batch, y_batch = mnist.train.next_batch(batch_size)
            sess.run(training_op, feed_dict={X: X_batch, y: y_batch})
        acc_train = accuracy.eval(feed_dict={X: X_batch, y: y_batch})
        acc_test = accuracy.eval(feed_dict={X: mnist.test.images, y: mnist.test.labels})
        print(epoch, "Train accuracy:", acc_train, "Test accuracy:", acc_test)

    save_path = saver.save(sess, "./my_model_final.ckpt")


with tf.Session() as sess:
    saver.restore(sess, save_path) #"my_model_final.ckpt")
    X_new_scaled = mnist.test.images[:20]
    Z = logits.eval(feed_dict={X: X_new_scaled})
    print(np.argmax(Z, axis=1))
    print(mnist.test.labels[:20])

Use Fully connected 

tf.reset_default_graph()

from tensorflow.contrib.layers import fully_connected

n_inputs = 28*28  # MNIST
n_hidden1 = 300
n_hidden2 = 100
n_outputs = 10
learning_rate = 0.01

X = tf.placeholder(tf.float32, shape=(None, n_inputs), name="X")
y = tf.placeholder(tf.int64, shape=(None), name="y")

with tf.name_scope("dnn"):
    hidden1 = fully_connected(X, n_hidden1, scope="hidden1")
    hidden2 = fully_connected(hidden1, n_hidden2, scope="hidden2")
    logits = fully_connected(hidden2, n_outputs, activation_fn=None, scope="outputs")

with tf.name_scope("loss"):
    xentropy = tf.nn.sparse_softmax_cross_entropy_with_logits(labels=y, logits=logits)
    loss = tf.reduce_mean(xentropy, name="loss")

with tf.name_scope("train"):
    optimizer = tf.train.GradientDescentOptimizer(learning_rate)
    training_op = optimizer.minimize(loss)

with tf.name_scope("eval"):
    correct = tf.nn.in_top_k(logits, y, 1)
    accuracy = tf.reduce_mean(tf.cast(correct, tf.float32))
 
init = tf.global_variables_initializer()
saver = tf.train.Saver()

n_epochs = 20
n_batches = 50

with tf.Session() as sess:
    init.run()
    for epoch in range(n_epochs):
        for iteration in range(mnist.train.num_examples // batch_size):
            X_batch, y_batch = mnist.train.next_batch(batch_size)
            sess.run(training_op, feed_dict={X: X_batch, y: y_batch})
        acc_train = accuracy.eval(feed_dict={X: X_batch, y: y_batch})
        acc_test = accuracy.eval(feed_dict={X: mnist.test.images, y: mnist.test.labels})
        print(epoch, "Train accuracy:", acc_train, "Test accuracy:", acc_test)
    save_path = saver.save(sess, "./my_model_final.ckpt")